Course Builder (Beta!)
Library
assembly
climate
community
computational-chemistry
data-science
ecology
epigenetics
galaxy-interface
- Using Workflow Parameters (Tutorial)
- Workflow Reports (Tutorial)
- Using dataset collections (Tutorial)
- SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis (Lecture)
- SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis (Tutorial)
- Rule Based Uploader (Tutorial)
- Uploading data to ENA (Lecture & Tutorial)
- Automating Galaxy workflows using the command line (Tutorial)
- Running RStudio on Galaxy (Demo)
sars-cov2
galaxy-intro
galaxy
crispr
genome-annotation
- Genome annotation with Prokka (Lecture)
- Genome annotation with Prokka (Tutorial)
- Refining Genome Annotations with Apollo (Lecture)
- Refining Genome Annotations with Apollo (Tutorial)
- Masking repeats with RepeatMasker (Tutorial)
- Genome annotation with Funannotate (Tutorial)
- Essential genes detection with Transposon insertion sequencing (Lecture) (Lecture) đ§ââď¸
introduction
metagenomics
proteomics
- Pandemics Research using Mass Spectrometry (Lecture & Demo)
- EncyclopeDIA (Lecture)
- EncyclopeDIA (Tutorial)
- Introduction to proteomics, protein identification, quantification and statistical modelling (Lecture)
- Metaproteomics tutorial (Demo)
- Proteogenomics 1: Database Creation (Tutorial)
- Proteogenomics 2: Database Search (Demo)
- Proteogenomics 3: Novel peptide analysis (Demo)
- Annotating a protein list identified by LC-MS/MS experiments (Tutorial)
- MaxQuant and MSstats for the analysis of label-free data (Tutorial)
proteogenomics
synthetic-biology
variant-analysis
sequence-analysis
statistics
- Introduction to Machine Learning (Lecture)
- Convolutional Neural Networks (CNN) (Tutorial)
- Feedforward Neural Networks (FNN) (Tutorial)
- Recurrent Neural Networks (RNN) (Tutorial)
- Image classification in Galaxy with fruit 360 dataset (Tutorial)
- Classification in Machine Learning (Tutorial)
- Introduction to Machine Learning using R
- Regression in Machine Learning
transcriptomics
- De novo transcriptome reconstruction with RNA-Seq (Tutorial)
- Generating a single cell matrix using Alevin (Demo)
- Introduction to Transcriptomics (Lecture)
- Whole transcriptome analysis of Arabidopsis thaliana (Lecture)
- Whole transcriptome analysis of Arabidopsis thaliana (Tutorial)
- Reference-based RNA-Seq data analysis (Tutorial)
- RNA Seq Counts to Viz in R (Tutorial)
- Visualization of RNA-Seq results with Volcano Plot in R (Tutorial)
- Visualization of RNA-Seq results with Volcano Plot (Tutorial)
- Bulk RNA Deconvolution with MuSiC (Tutorial)
- Trajectory Analysis using Python (Jupyter Notebook) in Galaxy (Demo)
- An introduction to scRNA-seq data analysis (Lecture)
- Understanding Barcodes (Demo)
- Pre-processing of 10X Single-Cell RNA Datasets (Demo)
- Clustering 3K PBMCs with Scanpy (Demo)
- Analysis of plant scRNA-Seq Data with Scanpy (Tutorial)
- Filter, Plot and Explore Single-cell RNA-seq Data (Demo)
visualisation
single-cell
- Bulk RNA Deconvolution with MuSiC (Tutorial)
- Trajectory Analysis using Python (Jupyter Notebook) in Galaxy (Demo)
- An introduction to scRNA-seq data analysis (Lecture)
- Pre-processing of 10X Single-Cell RNA Datasets (Demo)
- Clustering 3K PBMCs with Scanpy (Demo)
- Analysis of plant scRNA-Seq Data with Scanpy (Tutorial)
- Filter, Plot and Explore Single-cell RNA-seq Data (Demo)
webinar
wetlab
event
admin
- Admin Welcome (Lecture)
- Admin Training Week Overview (Tutorial)
- Galaxy Installation with Ansible (Tutorial)
- Ansible (Tutorial)
- Ansible (Lecture)
- Connecting Galaxy to a compute cluster (Tutorial)
- Reference Data with CVMFS (Tutorial)
- Reference Data with CVMFS (Tutorial)
- Data Libraries (Tutorial)
- Galaxy Monitoring with gxadmin (Tutorial)
- Running Jobs on Remote Resources with Pulsar (Lecture)
- Running Jobs on Remote Resources with Pulsar (Tutorial)
- Galaxy Interactive Tools (Tutorial)
- Mapping Jobs to Destinations (Tutorial)
- Performant Uploads with TUS (Tutorial)
- Recording Job Metrics (Tutorial)
- Server Maintenance and Backups (Lecture)
- Galaxy Monitoring with Telegraf and Grafana (Lecture)
- Galaxy Monitoring with Telegraf and Grafana (Tutorial)
- Distributed Object Storage (Tutorial)
- Use Singularity containers for running Galaxy jobs (Tutorial)
- Training Infrastructure as a Service (TIaaS) (Tutorial)
- Galaxy Tool Management with Ephemeris (Lecture)
- Galaxy Tool Management with Ephemeris (Tutorial)
- Upgrading Galaxy (Tutorial)
- User, Role, Group and Quota managment (Lecture)
contributing
dev
- Galaxy Code Architecture: Galaxy Ecosystem (Lecture) đ§ââď¸
- Galaxy Code Architecture: Models and Managers (Lecture) đ§ââď¸
- Galaxy Code Architecture: app and Dependency Injection (Lecture) đ§ââď¸
- Galaxy Code Architecture: Project Management (Lecture)
- Galaxy Code Architecture: Web Client (Lecture) đ§ââď¸
- Galaxy Code Architecture: Pluggable Components (Lecture) đ§ââď¸
- Galaxy Code Architecture: Principles (Lecture)
- Galaxy Code Architecture: Web Requests (Lecture) đ§ââď¸
- Galaxy Code Architecture: Files and Directories (Lecture Series) đ§ââď¸
- Introduction (Tutorial)
- Client Unit Tests (Tutorial)
- Debugging Wisdom (Lecture)
- API tests (Tutorial)
- Client Linting (Tutorial)
- Runtime Errors (Tutorial)
- Selenium (Tutorial)
- Unit Testing (Tutorial)
- Tools from Scratch
- ToolFactory: Generating Tools From Simple Scripts
- ToolFactory: Generating Tools From More Complex Scripts
Welcome to the Course Builder!
Here you can design your own course from the GTN and Gallantries' Library of Video Content. Follow the steps below to build your course
- Start by selecting some modules from the left.
- Then re-order your content until you're happy on the next tab.
- Configure the event settings like the title, start and end time, etc.
- Preview the daily schedule.
- And receive a Markdown file that can be contributed back to this repository to host your event.
Here you can control the ordering of the content in your schedule
Who all is involved in teaching this event?
When does the course start each day
Daily lunch time
When does the course end each day
Please open a Pull Request against this repository with the following content: